About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106419202_106419655_F

Intron Information:

Intron Rank:
142371
Intron Class:
major
Intron Phase:
Intron Coordinates:
106419202 - 106419655
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
CCACCAACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCACCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
63.4
0.3
0.9
54.6
33.9
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
50
0.08
2.1
80.59
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026675
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023449
106416826 - 106419843
3018