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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106427895_106440844_R

Intron Information:

Intron Rank:
138649
Intron Class:
major
Intron Phase:
Intron Coordinates:
106427895 - 106440844
Intron Length:
12950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GGACCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
89.5
0.89
0.7
85.1
29.5
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
51.1
0.11
1.6
63.95
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022100
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019543
106427741 - 106440907
13167