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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106437591_106440844_R

Intron Information:

Intron Rank:
138651
Intron Class:
major
Intron Phase:
Intron Coordinates:
106437591 - 106440844
Intron Length:
3254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTTTCTATATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
79
0.72
1
80.3
31.7
Major PPT
78.3
0.64
0.9
73.7
36
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
49.7
-0.1
2
65.56
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022100
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024266
106427741 - 106440907
13167