Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106512462_106517448_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

106512462 - 106517448

Intron Length:

4987

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGCACA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCTCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCACAT

U12 Branch Point Sequence:

TAGCCCATAACT

Flanking Amino Acid:

ATLLEFKPADEGELEAEWLQ

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

71.9

39.6

Major BPS

65.1

0.38

1.1

71.2

35.2

Major PPT

81.6

0.71

0.7

76.2

Minor 5ss

40.1

-1.1

2.8

45.2

Minor BPS

65.8

0.57

1.7

80.24

40.9

Associated Gene:

Gene:

ARHGAP28

Ensembl Gene ID:

ENSAPLG00000011853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012379

106470592 - 106544622

74031