Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106517667_106523239_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

106517667 - 106523239

Intron Length:

5573

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTAGC

5'SS Class:

major

3'SS Sequence:

CCTTGCCTATCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATCAT

U12 Branch Point Sequence:

TTTCACTGCAGT

Flanking Amino Acid:

RDIFGTNDSSPTFETVPVSP

Intron Amino Acid Position:

185

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

1.1

69.5

41.3

Major BPS

0.57

1.2

41.2

Major PPT

72.5

0.51

0.9

70.2

35.1

Minor 5ss

-1.2

2.8

55.8

41.5

Minor BPS

44.9

-0.3

2.3

71.51

44.8

Associated Gene:

Gene:

ARHGAP28

Ensembl Gene ID:

ENSAPLG00000011853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012379

106470592 - 106544622

74031