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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106529408_106529521_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106529408 - 106529521
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTTC
5'SS Class:
major
3'SS Sequence:
TGTTATTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTTCATATTT
Flanking Amino Acid:
RNRAERVRGRENGLFGVPLT
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
66.9
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.9
0.54
1.1
71.8
42.8
Minor 5ss
40.3
-1.1
3.5
59
45.8
Minor BPS
54.7
0.23
1.9
76
41.3

Associated Gene:

Gene:
ARHGAP28
Ensembl Gene ID:
ENSAPLG00000011853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012379
106470592 - 106544622
74031