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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106534322_106535740_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106534322 - 106535740
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
TTCATGTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATGTAATTATTC
Flanking Amino Acid:
YLPAFITLVEKISKIKLQLQ
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.7
40.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
74.4
0.55
0.9
72.8
37.3
Minor 5ss
35.4
-1.7
3
41.6
39.3
Minor BPS
46.7
-0.2
2
58.97
40

Associated Gene:

Gene:
ARHGAP28
Ensembl Gene ID:
ENSAPLG00000011853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012379
106470592 - 106544622
74031