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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106535824_106538083_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106535824 - 106538083
Intron Length:
2260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTGTCTGAGCA
Flanking Amino Acid:
LPEANRDTAKAFLQFLKKVV
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
55.3
0.16
1.8
71.77
40.4

Associated Gene:

Gene:
ARHGAP28
Ensembl Gene ID:
ENSAPLG00000011853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012379
106470592 - 106544622
74031