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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106539110_106541766_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106539110 - 106541766
Intron Length:
2657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGATAA
5'SS Class:
major
3'SS Sequence:
ATATTCACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTCTACTGAATA
Flanking Amino Acid:
MERERPERPEGAVTFPPYLQ
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
0.9
71.7
28.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
71.5
0.48
0.9
68.5
37.6
Minor 5ss
37.9
-1.4
3
46.4
48.9
Minor BPS
55.8
0.18
1.7
64.96
41.7

Associated Gene:

Gene:
ARHGAP28
Ensembl Gene ID:
ENSAPLG00000011853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012379
106470592 - 106544622
74031