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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106541922_106542559_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106541922 - 106542559
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
GCAAACTGAACC
Flanking Amino Acid:
DILARFHCENSHGSSQNMRG
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
79.3
31.1
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
79.9
0.67
0.7
73.3
31.6
Minor 5ss
28.2
-2.5
2.8
32.2
42.5
Minor BPS
48.5
-0.1
1.7
55.34
41.8

Associated Gene:

Gene:
ARHGAP28
Ensembl Gene ID:
ENSAPLG00000011853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012379
106470592 - 106544622
74031