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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106551864_106552943_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106551864 - 106552943
Intron Length:
1080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTAC
5'SS Class:
major
3'SS Sequence:
GCTGTTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATTACTTTATAT
Flanking Amino Acid:
AIGLEIVNGKVLFHVNNGAG
Intron Amino Acid Position:
2821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.3
38.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
74.8
0.56
1
68.6
41.3
Minor 5ss
42.7
-0.8
3.2
57.8
47.2
Minor BPS
57.7
0.32
1.7
76.52
39.8

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070