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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106553074_106553835_R

Intron Information:

Intron Rank:
57
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
106553074 - 106553835
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATCATTA
5'SS Class:
weak_minor
3'SS Sequence:
CTTTTTCAGATAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AAATCTTTTATT
Flanking Amino Acid:
FDGSGFAALCKEGYKVRSDV
Intron Amino Acid Position:
2777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.2
64.1
36.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
71.3
0.48
1
69.6
35.9
Minor 5ss
67
0.57
2.3
73.1
37.8
Minor BPS
59.6
0.38
1.6
72.19
39

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070