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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106553994_106555013_R

Intron Information:

Intron Rank:
56
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
106553994 - 106555013
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAGG
5'SS Class:
major
3'SS Sequence:
TCAATATGCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATGCATTAACT
Flanking Amino Acid:
LDYVAKNLGNVTHSIPACIG
Intron Amino Acid Position:
2725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
68.4
42.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
58.7
0.2
1
50.9
42.7
Minor 5ss
35.3
-1.7
3
45.3
42.7
Minor BPS
71
0.74
1.7
86.69
38.7

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070