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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106555173_106557160_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106555173 - 106557160
Intron Length:
1988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCAGCTTACTG
Flanking Amino Acid:
AVVNDGKWHTIKTEYAKRKG
Intron Amino Acid Position:
2672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
73.1
43.9
Major BPS
100
1.24
0.5
100
0
Major PPT
100
1.12
0.4
100
0
Minor 5ss
36.5
-1.5
3.1
51.2
45.4
Minor BPS
47
-0.3
2.1
55.31
46.4

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070