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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106559676_106560145_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106559676 - 106560145
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTTAAAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACTTTTTAAAA
Flanking Amino Acid:
GCISNLIFNKELLDFTTSMK
Intron Amino Acid Position:
2527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
62.5
43.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.7
0.44
1
63.5
40.8
Minor 5ss
34.8
-1.7
2.9
37.8
40.8
Minor BPS
65
0.47
1.3
69.01
37.3

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070