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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106560332_106560844_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106560332 - 106560844
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATGTG
5'SS Class:
major
3'SS Sequence:
TTTATCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TCTACTTTATCT
Flanking Amino Acid:
EHSLILIRNKRIITVQVDES
Intron Amino Acid Position:
2465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
69.7
41.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
86.6
0.82
0.7
85.5
29.1
Minor 5ss
34.6
-1.8
3.5
48.8
47.4
Minor BPS
65.3
0.56
1.6
80.29
41.9

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070