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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106560997_106562619_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106560997 - 106562619
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTAAATCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTGGTTAAAT
Flanking Amino Acid:
EKRQRRQAHLPFFSIMLVDG
Intron Amino Acid Position:
2415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
1
88.3
26.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.7
0.38
1
58.3
41.8
Minor 5ss
28.2
-2.5
3.8
40.7
39.2
Minor BPS
49.4
0.04
2.5
76.73
45.7

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070