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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106562791_106562989_R

Intron Information:

Intron Rank:
49
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
106562791 - 106562989
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAC
5'SS Class:
strong_major
3'SS Sequence:
GCTCATAAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTGCTCATAAAA
Flanking Amino Acid:
YGVRKGCVLEPIRTVNILNN
Intron Amino Acid Position:
2358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.5
35.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
53.7
0.08
1
48.4
38.1
Minor 5ss
29.3
-2.4
3.5
40.3
46.1
Minor BPS
53.1
0.09
1.7
66.96
38.9

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070