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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106565144_106566307_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106565144 - 106566307
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGATTT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
LLLYLTSNGTRDFLSLELID
Intron Amino Acid Position:
2224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.9
35.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.4
0.84
0.7
80.6
31.5
Minor 5ss
46.8
-0.3
3.2
75.4
40.1
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070