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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106566459_106567359_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106566459 - 106567359
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
TCAACTTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTCTTTTCAACT
Flanking Amino Acid:
REGICNGCFGSPQDEDTSFH
Intron Amino Acid Position:
2173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.3
38.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
66.9
0.38
0.9
61.3
34.7
Minor 5ss
48.1
-0.2
2.5
67.9
42.9
Minor BPS
61.6
0.44
1.6
74.97
42.5

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070