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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106567485_106568034_R

Intron Information:

Intron Rank:
44
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
106567485 - 106568034
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCAGTTC
5'SS Class:
weak_major
3'SS Sequence:
ATTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTAACATTAATT
Flanking Amino Acid:
FIGGLGGQIKKSPAVKVTHF
Intron Amino Acid Position:
2132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1.2
59.5
40.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
90.1
0.9
0.7
84.7
29.5
Minor 5ss
35.9
-1.6
3.5
50.6
46.1
Minor BPS
68.1
0.65
1.6
83.31
37.2

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070