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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106568186_106568468_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106568186 - 106568468
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTAAA
5'SS Class:
major
3'SS Sequence:
TTTGAATTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTAAAACT
Flanking Amino Acid:
NNKWHRIHATRFGKTGTLSI
Intron Amino Acid Position:
2081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.1
35
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
70.9
0.47
1.1
66.3
44
Minor 5ss
33.7
-1.9
2.9
41.9
44.8
Minor BPS
64.6
0.54
1.9
88.67
36.3

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070