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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106570134_106570448_R

Intron Information:

Intron Rank:
40
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
106570134 - 106570448
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCAGCAATCACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTCATTTACAT
Flanking Amino Acid:
SELITDSSKAAEKQVKEVKA
Intron Amino Acid Position:
1940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
59
0.2
1
50.2
36.8
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
51.1
0.11
1.9
75.72
40.6

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070