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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106572753_106575616_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106572753 - 106575616
Intron Length:
2864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTGATTAAATA
Flanking Amino Acid:
SRVVNGPVDLVLCGLYGICL
Intron Amino Acid Position:
1819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.4
0.53
0.9
69.3
36
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
50.3
0
1.9
67.44
39.9

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070