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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106575756_106576865_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106575756 - 106576865
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAAAC
5'SS Class:
major
3'SS Sequence:
ATCTCCTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TATTTGTTAATC
Flanking Amino Acid:
QFQRLVDALESGLSKIRNVT
Intron Amino Acid Position:
1772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
71.6
0.49
0.9
70
35.9
Minor 5ss
39.3
-1.2
2.9
51.9
44.9
Minor BPS
62.8
0.38
2
74.79
36.1

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070