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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106577231_106577472_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106577231 - 106577472
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGACTG
5'SS Class:
major
3'SS Sequence:
TTCTATGCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
ACTACTATAAAA
Flanking Amino Acid:
LISSNLGELNEKKLNIKEGK
Intron Amino Acid Position:
1685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
68.4
42.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
74.6
0.55
0.9
69.1
36.8
Minor 5ss
38
-1.4
3.3
53.1
43.7
Minor BPS
49.3
-0
1.7
60.83
38.8

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070