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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106577684_106579621_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106577684 - 106579621
Intron Length:
1938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCCTA
5'SS Class:
major
3'SS Sequence:
CCCACTTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTGCTCTTAATT
Flanking Amino Acid:
QQHYNATSLLKAAENLLLRV
Intron Amino Acid Position:
1614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
71.7
40.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
67.1
0.39
1
60.2
40.3
Minor 5ss
43.2
-0.7
3.1
56.8
41.8
Minor BPS
75.8
0.89
1.1
84.85
35.9

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070