About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106579799_106579849_R

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
106579799 - 106579849
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCT|GCAATTTTT
5'SS Class:
weak_major
3'SS Sequence:
TGCTATGACTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TACTCTTTTATT
Flanking Amino Acid:
LTELFICTEMLRLFSYLVLA
Intron Amino Acid Position:
1555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.1
0.07
1.5
66.2
45
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
53.1
0.07
1.2
56.4
42.6
Minor 5ss
38.8
-1.3
4.2
68.2
42.6
Minor BPS
63.4
0.5
1.6
76.34
41.1

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070