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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106583963_106584797_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106583963 - 106584797
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
ATTGTTTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAAAT
Flanking Amino Acid:
RHLLVEGECVSCDDNCTGVL
Intron Amino Acid Position:
1520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
63.3
36.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.4
0.64
0.8
70.7
40.5
Minor 5ss
33.2
-1.9
3.5
44.9
44.6
Minor BPS
66.1
0.58
1.6
81.8
39.4

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070