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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106584992_106585272_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106584992 - 106585272
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TCCCCTCTGATG
Flanking Amino Acid:
LPGYEGQYCEKCSLGYYGDP
Intron Amino Acid Position:
1455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
33.3
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
75.9
0.58
0.8
70.3
28.9
Minor 5ss
38.2
-1.3
3
49.5
41.2
Minor BPS
46
-0.4
1.7
47.97
40.1

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070