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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106585360_106586328_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106585360 - 106586328
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACCAGA
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCCTTCCTC
Flanking Amino Acid:
LCACPRANPVSFSPTCVLKG
Intron Amino Acid Position:
1426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.9
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.9
0.78
0.7
77.2
31.6
Minor 5ss
44.3
-0.6
2.7
58.2
46
Minor BPS
47
-0.2
3.6
77.77
38.8

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070