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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106586451_106588224_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106586451 - 106588224
Intron Length:
1774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTGTCTGAATT
Flanking Amino Acid:
TCDPETGKCLNCRDNTVGDY
Intron Amino Acid Position:
1386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
75.1
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.6
0.64
1
78
40.1
Minor 5ss
42.2
-0.9
2.4
48.9
42.2
Minor BPS
57.1
0.3
1.5
70.32
41.3

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070