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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106588607_106589829_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106588607 - 106589829
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
ATGTATCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTCTGCATGT
Flanking Amino Acid:
AAYGQGLQQSRIANISMEIA
Intron Amino Acid Position:
1299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73
0.52
0.9
66.9
39.6
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
40.7
-0.6
2.5
63.14
47.4

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070