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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106592219_106594674_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106592219 - 106594674
Intron Length:
2456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAAA
5'SS Class:
major
3'SS Sequence:
TTATTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATTT
Flanking Amino Acid:
EEETGICTCKENVFGLQCSE
Intron Amino Acid Position:
1087

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
67.9
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.7
0.8
0.8
78.1
36.2
Minor 5ss
30.6
-2.2
3.3
39.7
45.9
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070