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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106598944_106599814_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106598944 - 106599814
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTGTTCAACA
Flanking Amino Acid:
VIGQRCDKCLNGYYGLLTGL
Intron Amino Acid Position:
902

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.6
0.62
0.9
73.4
35.9
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
56.5
0.2
2
71.01
41.7

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070