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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106602728_106603601_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
106602728 - 106603601
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCTCT
5'SS Class:
weak_major
3'SS Sequence:
CGTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
ACACATGTAATG
Flanking Amino Acid:
PQGYTGISCESCLPGYYRVD
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.3
40.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
86.9
0.83
0.7
84.4
30.5
Minor 5ss
57.2
0.24
2.5
74.8
41.2
Minor BPS
40.8
-0.8
2
40.58
37.7

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070