Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106603714_106604994_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

106603714 - 106604994

Intron Length:

1281

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGAG

5'SS Class:

strong_major

3'SS Sequence:

TGCTTAATCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCATGCTTAATC

Flanking Amino Acid:

SYNIAKRAVYRLDSVTLDTA

Intron Amino Acid Position:

649

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.1

37.5

Major BPS

100

1.24

0.5

100

Major PPT

67.6

0.4

0.9

59.4

40.8

Minor 5ss

23.1

-3.1

3.2

27.7

44.2

Minor BPS

64.9

0.45

1.8

70.78

41.1

Associated Gene:

Gene:

LAMA1

Ensembl Gene ID:

ENSAPLG00000010343

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010850

106550005 - 106632074

82070