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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106606078_106607908_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106606078 - 106607908
Intron Length:
1831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTTACT
Flanking Amino Acid:
SAPEPYLGNKLTAFGGDLKY
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.3
27.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.6
0.78
0.8
82
34.1
Minor 5ss
39.1
-1.2
2.9
50.9
39.6
Minor BPS
67.1
0.62
1.6
82.96
38.5

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070