About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106612314_106612831_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106612314 - 106612831
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATCAATT
Flanking Amino Acid:
KDEHHSDSQRGMWPGQCQCR
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.6
36.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.9
0.61
1
75.4
38.6
Minor 5ss
29
-2.4
3.5
38
46.9
Minor BPS
58.4
0.34
1.8
78.51
37.5

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070