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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106614321_106615416_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106614321 - 106615416
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TATTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTAAAAA
Flanking Amino Acid:
GTISAGNKCEKCNCHNKAED
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.2
0.72
0.7
81.6
30
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
57.1
0.22
1.7
70.15
36.2

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070