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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106619674_106623705_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106619674 - 106623705
Intron Length:
4032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATGATTAAGT
Flanking Amino Acid:
SRLVPLEHGEIHTSLINGRP
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
75.3
0.57
0.7
68.5
31.8
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
51.7
0.13
2.3
78
44

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070