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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106623949_106631469_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106623949 - 106631469
Intron Length:
7521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GCATTTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TCTTCTTGCATT
Flanking Amino Acid:
WVTITLDLRQVFQVAYVIIK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
78.7
0.65
0.8
77
37
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
54.8
0.23
1.9
76.06
41.4

Associated Gene:

Gene:
LAMA1
Ensembl Gene ID:
ENSAPLG00000010343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010850
106550005 - 106632074
82070