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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106694571_106695310_F

Intron Information:

Intron Rank:
132785
Intron Class:
major
Intron Phase:
Intron Coordinates:
106694571 - 106695310
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTACCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
88.1
28.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.7
0.33
1
59.2
35.9
Minor 5ss
45.1
-0.5
3.1
67
44.3
Minor BPS
68.4
0.66
1.7
88.82
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021409
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034495
106694238 - 106700131
5894
ENSAPLT00000024545
106694238 - 106696432
2195