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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106725333_106749041_R

Intron Information:

Intron Rank:
140738
Intron Class:
major
Intron Phase:
Intron Coordinates:
106725333 - 106749041
Intron Length:
23709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
37.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037265
106724215 - 106749549
25335