About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106728189_106729086_R

Intron Information:

Intron Rank:
147865
Intron Class:
major
Intron Phase:
Intron Coordinates:
106728189 - 106729086
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTC
5'SS Class:
strong_major
3'SS Sequence:
CATCTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
77.3
31.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.7
0.56
0.9
66.6
39
Minor 5ss
50.8
0.03
2.5
69.7
41.2
Minor BPS
78.1
0.88
1.4
87.43
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026844
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032920
106726440 - 106729901
3462
ENSAPLT00000018584
106726440 - 106729901
3462