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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106743928_106746452_F

Intron Information:

Intron Rank:
141127
Intron Class:
major
Intron Phase:
Intron Coordinates:
106743928 - 106746452
Intron Length:
2525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCGCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAG
U12 Branch Point Sequence:
TTCTCCGCATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
59.4
0.23
1.5
69.4
37.7
Major PPT
72
0.49
0.9
70.7
34.8
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
47
-0.2
2.4
67.27
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029736
106732228 - 106746787
14560
ENSAPLT00000028448
106743019 - 106747576
4558