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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1069306_1075879_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1069306 - 1075879
Intron Length:
6574

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCACGGGGC
5'SS Class:
major
3'SS Sequence:
GGATCCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCAGAA
U12 Branch Point Sequence:
AACCCCTCAGAA
Flanking Amino Acid:
TRERVGNCIGLHSINVAVLP
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.3
39.1
Major BPS
52.6
0.07
1
50.3
35.4
Major PPT
68.4
0.41
1
63.2
42.7
Minor 5ss
17.7
-3.7
4.1
23
37.7
Minor BPS
44.4
-0.4
1.8
50.71
39.8

Associated Gene:

Gene:
PTH1R
Ensembl Gene ID:
ENSAPLG00000005598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005825
991927 - 1103775
111849