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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106940863_106943925_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106940863 - 106943925
Intron Length:
3063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTTCTTCCGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TGTTGCATAAAT
Flanking Amino Acid:
DEVKVLGHPCTKTPHFLRLQ
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.3
34.1
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
76.1
0.59
0.9
72.5
32.3
Minor 5ss
38.9
-1.3
2.7
49
34.4
Minor BPS
54.1
0.21
2.1
79.4
42

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033580
106782350 - 107251640
469291
ENSAPLT00000029550
106782350 - 107251640
469291
ENSAPLT00000045800
106782350 - 107251640
469291
ENSAPLT00000020518
106782350 - 107251640
469291
ENSAPLT00000044365
106782350 - 107251640
469291
ENSAPLT00000009028
106782350 - 107251640
469291
ENSAPLT00000038143
106782350 - 107251640
469291