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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_106972470_107027737_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106972470 - 107027737
Intron Length:
55268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GGTAATTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
ATGTTGGTAATT
Flanking Amino Acid:
PALKTRTKCADPMRGPRKLE
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
74.3
0.55
1
69.6
45.6
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
45.8
-0.2
2.5
69.02
42.9

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029550
106782350 - 107251640
469291
ENSAPLT00000045800
106782350 - 107251640
469291
ENSAPLT00000020518
106782350 - 107251640
469291
ENSAPLT00000044365
106782350 - 107251640
469291
ENSAPLT00000009028
106782350 - 107251640
469291
ENSAPLT00000038143
106782350 - 107251640
469291
ENSAPLT00000033580
106782350 - 107251640
469291