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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107031368_107035620_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107031368 - 107035620
Intron Length:
4253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCAAGC
5'SS Class:
major
3'SS Sequence:
TATTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ACTTTCTTATTC
Flanking Amino Acid:
QTYGVITLYEITYKAVSSFD
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
62.5
42.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.5
0.89
0.7
84.7
29.6
Minor 5ss
45.5
-0.5
2.7
61.4
43
Minor BPS
61.9
0.35
1.6
67.76
38.6

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029550
106782350 - 107251640
469291
ENSAPLT00000045800
106782350 - 107251640
469291
ENSAPLT00000020518
106782350 - 107251640
469291
ENSAPLT00000044365
106782350 - 107251640
469291
ENSAPLT00000009028
106782350 - 107251640
469291
ENSAPLT00000038143
106782350 - 107251640
469291
ENSAPLT00000033580
106782350 - 107251640
469291